STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1673KEGG: ava:Ava_B0277 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Tery_4817
PFAM: response regulator receiveR GAF Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: ana:all1703 two-component response regulator.
  
  
 0.708
Tery_4980
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:all0219 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiveR PAS fold-3 PAS fold; SMART: PAS.
   
    0.578
Tery_0714
CheA signal transduction histidine kinases; PFAM: response regulator receiveR CheW-like protein ATP-binding region, ATPase-like Hpt; KEGG: syn:sll0043 positive phototaxis protein, homologous to chemotaxis protein CheA, two-component hybrid histidine kinase.
  
  
 0.515
Tery_3244
Putative CheA signal transduction histidine kinases; PFAM: response regulator receiveR CheW-like protein ATP-binding region, ATPase-like Signal transducing histidine kinase, homodimeric; KEGG: ava:Ava_0505 CheA signal transduction histidine kinases (STHK).
  
  
 0.515
Tery_4228
PFAM: MCP methyltransferase, CheR-type; KEGG: rpa:RPA1631 chemotaxis methyltransferase, CheR2.
  
  
 0.415
Tery_0615
PFAM: response regulator receiveR ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ana:all4496 two-component system sensory histidine kinase.
  
  
 0.403
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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