STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1744KEGG: ava:Ava_0373 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Tery_2476
KEGG: ava:Ava_3210 hypothetical protein.
  
     0.768
Tery_3789
KEGG: ana:all0333 hypothetical protein.
  
     0.767
Tery_3832
KEGG: ana:alr1960 hypothetical protein.
  
     0.763
Tery_0206
KEGG: ava:Ava_2889 hypothetical protein.
  
     0.754
Tery_3211
TIGRFAM: folate/biopterin transporter; PFAM: Biopterin transport-related protein BT1 major facilitator superfamily MFS_1; KEGG: ava:Ava_1237 biopterin transport-related protein BT1.
  
     0.749
Tery_2166
KEGG: ava:Ava_0350 hypothetical protein.
  
     0.748
Tery_0757
PFAM: TPR repeat heat shock protein DnaJ-like Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_0984 heat shock protein DnaJ-like.
  
     0.745
Tery_2876
KEGG: syf:Synpcc7942_2395 hypothetical protein.
  
     0.743
Tery_4373
KEGG: ana:all3582 hypothetical protein.
  
     0.741
Tery_3166
KEGG: ava:Ava_1924 hypothetical protein.
  
     0.735
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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