STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1891PFAM: peptidase-like; KEGG: ava:Ava_1636 peptidase. (1156 aa)    
Predicted Functional Partners:
Tery_1892
PFAM: peptidase-like; KEGG: ava:Ava_1636 peptidase.
 
    
0.595
Tery_4032
PFAM: TrkA-N; KEGG: ava:Ava_2853 TrkA-N.
  
     0.566
Tery_0809
KEGG: ava:Ava_0829 hypothetical protein.
  
     0.561
Tery_4180
PFAM: Peptidoglycan-binding domain 1; KEGG: mag:amb3986 phage-related lysozyme.
 
     0.531
Tery_1890
PFAM: von Willebrand factor, type A Integrin, beta chain-like peptidase-like; KEGG: ssc:396943 CD18 leukocyte adhesion molecule.
      
0.519
Tery_2357
PFAM: protein of unknown function DUF433; KEGG: ana:alr1892 hypothetical protein.
  
     0.511
Tery_4500
PFAM: protein of unknown function DUF820; KEGG: gvi:gll1414 hypothetical protein.
  
     0.498
Tery_4394
PFAM: PBS lyase HEAT-like repeat; KEGG: ana:alr2986 unknown protein.
  
     0.479
Tery_0152
Hypothetical protein.
  
     0.451
Tery_3350
PFAM: GUN4-like; KEGG: rru:Rru_A3262 hypothetical protein.
  
     0.451
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.