STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1915PFAM: macrophage migration inhibitory factor; KEGG: syf:Synpcc7942_2599 hypothetical protein. (117 aa)    
Predicted Functional Partners:
hisC
PFAM: aminotransferase, class I and II; KEGG: ava:Ava_2242 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
  0.902
Tery_0293
PFAM: aminotransferase, class I and II; KEGG: ava:Ava_2127 aspartate aminotransferase.
     
  0.900
Tery_3525
PFAM: aminotransferase, class I and II; KEGG: ade:Adeh_2315 aminotransferase, class I and II.
     
  0.900
Tery_4182
KEGG: ava:Ava_4666 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
  0.900
Tery_1917
PFAM: von Willebrand factor, type A; KEGG: ava:Ava_B0132 serine/threonine protein kinase with WD40 repeats.
 
     0.608
Tery_1916
Hypothetical protein.
       0.534
Tery_1918
PFAM: GUN4-like; KEGG: ana:alr4949 serine/threonine kinase.
       0.499
Tery_3471
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ana:alr2074 hypothetical protein.
 
   
 0.412
Tery_4360
KEGG: syf:Synpcc7942_1632 hypothetical protein.
  
     0.400
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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