STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1920PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMb20476 putative ABC transporter periplasmic dipeptide-binding protein. (607 aa)    
Predicted Functional Partners:
Tery_0434
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:alr4583 peptide transport system permease protein.
 0.993
Tery_1382
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:alr0141 oligopeptide transport system permease protein.
 0.993
Tery_1126
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2263 binding-protein-dependent transport systems inner membrane component.
 0.986
Tery_2957
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_4163 binding-protein-dependent transport systems inner membrane component.
 0.986
Tery_2656
PFAM: ABC transporter related; SMART: ATPase; KEGG: ava:Ava_4993 ABC transporter-like; Belongs to the ABC transporter superfamily.
 
 
 0.977
Tery_0199
PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: ana:all4778 peptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.974
Tery_3355
PFAM: extracellular solute-binding protein, family 5; KEGG: ana:alr0140 oligopeptide transport system substrate-binding protein.
  
  
 
0.929
Tery_4719
PFAM: extracellular solute-binding protein, family 5; KEGG: ana:alr3884 oligopeptide transport system substrate-binding protein.
  
  
 
0.929
Tery_1384
KEGG: ana:alr0141 oligopeptide transport system permease protein.
 
 
 0.729
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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