STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1947PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mba:Mbar_A2604 TPR repeat. (564 aa)    
Predicted Functional Partners:
Tery_1251
Methyltransferase FkbM family; KEGG: pmn:PMN2A_1093 TPR repeat; TIGRFAM: methyltransferase FkbM family; PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region.
  
     0.772
Tery_5036
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_2856 TPR repeat.
 
     0.771
Tery_2509
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_4803 tetratricopeptide TPR_3.
  
     0.759
Tery_3754
KEGG: ava:Ava_1043 methyltransferase FkbM; TIGRFAM: methyltransferase FkbM family; PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region.
  
     0.758
Tery_0023
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pmt:PMT1811 TPR repeat:HAT (Half-A-TPR) repeat.
  
     0.757
Tery_1969
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_3177 TPR repeat.
  
     0.725
Tery_1949
PFAM: ferredoxin thioredoxin reductase, alpha chain; KEGG: ava:Ava_0401 ferredoxin thioredoxin reductase, alpha chain.
      
 0.681
Tery_1883
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_3450 TPR repeat.
  
     0.668
Tery_2387
PFAM: Tetratricopeptide TPR_2; KEGG: ana:all0562 hypothetical protein.
 
   0.538
Tery_1657
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pmt:PMT0296 TPR repeat.
 
 
0.453
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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