STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1998SMART: extracellular solute-binding protein, family 3; KEGG: syf:Synpcc7942_0246 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family. (343 aa)    
Predicted Functional Partners:
Tery_2000
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_0738 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
 0.989
Tery_2001
PFAM: ABC transporter related; SMART: ATPase; KEGG: ava:Ava_0737 ABC transporter-like.
 
 0.989
Tery_1999
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: syf:Synpcc7942_0247 ABC-type permease for basic amino acids and glutamine.
 
 
 0.966
Tery_4514
PFAM: extracellular solute-binding protein, family 3; KEGG: syn:slr0341 putative polar amino acid transport system substrate-binding protein.
  
     0.591
Tery_4447
Multi-sensor hybrid histidine kinase; KEGG: ana:all2875 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein response regulator receiveR GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold; SMART: PAS PAC motif.
  
 
 0.493
Tery_4980
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:all0219 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiveR PAS fold-3 PAS fold; SMART: PAS.
     
 0.474
Tery_4110
PFAM: binding-protein-dependent transport systems inner membrane component Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pst:PSPTO3059 glycine betaine/L-proline ABC transporter, permease protein.
  
  
 0.419
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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