STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2000TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_0738 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine. (403 aa)    
Predicted Functional Partners:
Tery_2001
PFAM: ABC transporter related; SMART: ATPase; KEGG: ava:Ava_0737 ABC transporter-like.
 0.999
Tery_1999
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: syf:Synpcc7942_0247 ABC-type permease for basic amino acids and glutamine.
 
0.992
Tery_1998
SMART: extracellular solute-binding protein, family 3; KEGG: syf:Synpcc7942_0246 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.989
Tery_4754
PFAM: Hemolysin-type calcium-binding region Na-Ca exchanger/integrin-beta4; SMART: extracellular solute-binding protein, family 3; KEGG: bja:bll7673 hypothetical protein.
 
 
 0.877
Tery_4514
PFAM: extracellular solute-binding protein, family 3; KEGG: syn:slr0341 putative polar amino acid transport system substrate-binding protein.
 
 
 0.744
Tery_4110
PFAM: binding-protein-dependent transport systems inner membrane component Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pst:PSPTO3059 glycine betaine/L-proline ABC transporter, permease protein.
  
  
 0.639
Tery_4470
PFAM: extracellular solute-binding protein, family 3 Ion transport protein Ion transport 2; SMART: Ionotropic glutamate receptor; KEGG: pmt:PMT0515 possible ligand gated channel (GIC family).
 
 
 0.561
Tery_0466
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: ava:Ava_1294 glutamine amidotransferase, class-II.
   
  
 0.542
Tery_1459
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: plu:plu1281 glycine betaine-binding periplasmic protein precursor ProX.
  
  
 0.520
Tery_1458
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: plu:plu1281 glycine betaine-binding periplasmic protein precursor ProX.
  
  
 0.518
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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