STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2002PFAM: regulatory protein, MerR Resolvase-like; KEGG: tko:TK0655 predicted site-specific integrase/resolvase. (148 aa)    
Predicted Functional Partners:
Tery_2003
TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 transposase, IS605 OrfB; KEGG: cya:CYA_1977 ISSoc7, transposase.
 
    0.827
Tery_4904
KEGG: ava:Ava_B0071 transposase, IS891/IS1136/IS1341.
  
    0.513
Tery_2001
PFAM: ABC transporter related; SMART: ATPase; KEGG: ava:Ava_0737 ABC transporter-like.
       0.477
Tery_0393
TIGRFAM: transposase, IS605 OrfB family; KEGG: ava:Ava_B0071 transposase, IS891/IS1136/IS1341.
  
    0.430
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.