STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2003TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 transposase, IS605 OrfB; KEGG: cya:CYA_1977 ISSoc7, transposase. (409 aa)    
Predicted Functional Partners:
Tery_2002
PFAM: regulatory protein, MerR Resolvase-like; KEGG: tko:TK0655 predicted site-specific integrase/resolvase.
 
    0.826
Tery_0668
PFAM: putative transposase, IS891/IS1136/IS1341; KEGG: tel:tlr1113 putative transposase.
  
     0.773
Tery_3287
KEGG: ava:Ava_1829 transposase, IS891/IS1136/IS1341.
 
     0.767
Tery_0465
Resolvase-like; PFAM: regulatory protein, MerR Resolvase-like; KEGG: tko:TK0655 predicted site-specific integrase/resolvase.
  
    0.661
Tery_3670
TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR Resolvase-like; KEGG: mja:MJ0014 hypothetical protein.
  
    0.651
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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