STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2010NnrU; PFAM: NnrU; KEGG: ava:Ava_1748 NnrU. (237 aa)    
Predicted Functional Partners:
Tery_3917
PFAM: photosystem II manganese-stabilizing protein PsbO; KEGG: ana:all3854 manganese-stabilzing protein precursor.
  
     0.774
Tery_3954
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
     0.774
psb27
Photosystem II 11 kD protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.773
Tery_1001
KEGG: ana:alr2749 hypothetical protein.
  
     0.772
Tery_0912
PFAM: protein of unknown function DUF1350; KEGG: ava:Ava_3724 protein of unknown function DUF1350.
  
     0.771
Tery_4011
PFAM: amine oxidase; KEGG: syn:slr1254 phytoene dehydrogenase, phytoene desaturase.
  
     0.771
Tery_0170
KEGG: ava:Ava_4650 hypothetical protein.
  
     0.759
Tery_4709
KEGG: ana:alr3414 hypothetical protein.
  
     0.758
Tery_3708
PFAM: protein of unknown function YGGT; KEGG: ava:Ava_0517 protein of unknown function YGGT.
 
     0.755
Tery_1800
KEGG: ava:Ava_0386 hypothetical protein.
  
     0.747
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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