Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tery_2012KEGG: ava:Ava_3611 peptidase C14, caspase catalytic subunit P20. (328 aa)    
Predicted Functional Partners:
Tery_5007
Hypothetical protein; KEGG: ava:Ava_3528 peptidoglycan-binding domain 1.
  
     0.740
Tery_1066
KEGG: syn:slr0554 hypothetical protein.
  
    0.736
Tery_2289
KEGG: ava:Ava_1245 hypothetical protein.
  
     0.713
Tery_4219
KEGG: ava:Ava_3525 heterocyst differentiation protein.
  
     0.688
Tery_4794
KEGG: ava:Ava_0442 hypothetical protein.
  
     0.685
Tery_2457
KEGG: ava:Ava_3754 hypothetical protein.
  
     0.684
Tery_0189
KEGG: ana:all3643 hypothetical protein.
  
    0.674
Tery_2808
KEGG: ana:alr2800 WD-repeat protein.
  
     0.638
Tery_0211
KEGG: ava:Ava_1391 hypothetical protein.
  
     0.636
Tery_0310
KEGG: ava:Ava_2472 hypothetical protein.
  
     0.631
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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