STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2021Resolvase, RNase H-like fold; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (133 aa)    
Predicted Functional Partners:
Tery_2022
KEGG: ava:Ava_3282 hypothetical protein.
 
   
 0.905
Tery_0538
PFAM: permease YjgP/YjgQ; KEGG: ana:alr4069 hypothetical protein.
 
     0.785
Tery_4466
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ana:alr2231 hypothetical protein; Belongs to the OprB family.
  
     0.773
Tery_0838
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ana:alr2231 hypothetical protein; Belongs to the OprB family.
  
     0.772
Tery_4465
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ana:alr2231 hypothetical protein; Belongs to the OprB family.
  
     0.772
Tery_1234
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ava:Ava_2510 S-layer region-like; Belongs to the OprB family.
  
     0.771
Tery_4653
PFAM: surface antigen (D15) surface antigen variable numbeR Polypeptide-transport-associated, ShlB-type; KEGG: ava:Ava_0094 surface antigen variable number.
  
     0.765
Tery_1755
PFAM: polysaccharide pyruvyl transferase; KEGG: ava:Ava_3375 polysaccharide pyruvyl transferase.
  
     0.695
Tery_4505
PFAM: outer membrane efflux protein; KEGG: ava:Ava_1015 outer membrane efflux protein.
  
     0.693
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
    0.673
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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