STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2222KEGG: syf:Synpcc7942_0676 hypothetical protein. (398 aa)    
Predicted Functional Partners:
Tery_3228
KEGG: ana:alr4005 putative lipid-A-disaccharide synthase.
 
     0.770
Tery_1234
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ava:Ava_2510 S-layer region-like; Belongs to the OprB family.
  
     0.626
Tery_4466
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ana:alr2231 hypothetical protein; Belongs to the OprB family.
  
     0.624
Tery_2022
KEGG: ava:Ava_3282 hypothetical protein.
  
     0.620
Tery_0838
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ana:alr2231 hypothetical protein; Belongs to the OprB family.
  
     0.613
Tery_0538
PFAM: permease YjgP/YjgQ; KEGG: ana:alr4069 hypothetical protein.
 
     0.599
Tery_2021
Resolvase, RNase H-like fold; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.545
Tery_4465
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ana:alr2231 hypothetical protein; Belongs to the OprB family.
  
     0.529
Tery_0883
PFAM: glycosyl transferase, family 2; KEGG: syn:sll1664 hypothetical protein.
  
     0.518
Tery_1715
PFAM: NAD-dependent epimerase/dehydratase Male sterility-like; KEGG: ava:Ava_1789 NAD-dependent epimerase/dehydratase.
  
     0.517
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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