STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2382PFAM: HEAT domain containing protein PBS lyase HEAT-like repeat; KEGG: gvi:glr1257 phycocyanin alpha phycocyanobilin lyase related protein NblB homolog. (234 aa)    
Predicted Functional Partners:
Tery_3240
PFAM: Phycobilisome protein; KEGG: gvi:gll1254 similar to allophycocyanin alpha chain.
 
   
 0.782
Tery_0980
PFAM: HEAT domain containing protein PBS lyase HEAT-like repeat; KEGG: gvi:gll1187 putative phycoerythrin lyase subunit.
  
     0.767
Tery_0987
PFAM: HEAT domain containing protein PBS lyase HEAT-like repeat; KEGG: gvi:gll1255 bilin biosynthesis protein MpeU homolog.
  
     0.767
cpcS4
Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.767
Tery_0978
PFAM: HEAT domain containing protein PBS lyase HEAT-like repeat; KEGG: gvi:gll1255 bilin biosynthesis protein MpeU homolog.
  
     0.765
cpcT1
Protein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.764
Tery_0990
PFAM: PBS lyase HEAT-like repeat; KEGG: gvi:gll1188 putative phycoerythrin lyase subunit.
  
     0.762
Tery_0995
PFAM: HEAT domain containing protein PBS lyase HEAT-like repeat; KEGG: gvi:gll1187 putative phycoerythrin lyase subunit.
  
     0.757
Tery_5051
PFAM: ferredoxin-dependent bilin reductase; KEGG: gvi:glr1260 15,16-dihydrobiliverdin:ferredoxin oxidoreductase; Belongs to the HY2 family.
  
   
 0.751
cpcS3
Putative phycoerythrin-associated linker protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.750
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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