STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2504PFAM: regulatory protein GntR, HTH; KEGG: ava:Ava_3734 transcriptional regulator, GntR family. (327 aa)    
Predicted Functional Partners:
Tery_4797
KEGG: ana:alr1215 hypothetical protein.
  
     0.734
Tery_1229
KEGG: ava:Ava_2513 hypothetical protein; Belongs to the UPF0367 family.
  
     0.723
Tery_0673
KEGG: ava:Ava_1261 hypothetical protein.
  
     0.667
Tery_2871
KEGG: ava:Ava_3280 hypothetical protein.
  
     0.658
Tery_2698
KEGG: ava:Ava_3144 hypothetical protein.
  
     0.631
Tery_3215
KEGG: ana:all2716 hypothetical protein.
  
     0.594
Tery_4615
PFAM: glycosyl transferase, group 1; KEGG: ava:Ava_0727 glycosyl transferase, group 1.
  
     0.556
Tery_2373
KEGG: ava:Ava_2529 hypothetical protein.
  
     0.544
Tery_3980
KEGG: ana:alr3827 hypothetical protein.
  
     0.541
ndhO
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.506
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.