STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2563TIGRFAM: plastocyanin; PFAM: blue (type 1) copper domain; KEGG: ava:Ava_2745 plastocyanin precursor. (133 aa)    
Predicted Functional Partners:
petA
Cytochrome f; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
  
 
   0.889
Tery_1634
PFAM: photosystem I reaction center protein PsaF, subunit III; KEGG: tel:tlr2411 plastocyanin docking protein.
   
 
 0.871
psaE
Photosystem I reaction centre subunit IV/PsaE; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
 
 0.807
Tery_2565
KEGG: ana:alr2570 hypothetical protein.
 
     0.791
Tery_0848
KEGG: mba:Mbar_A1995 cell surface protein.
   
   0.752
Tery_0849
KEGG: mac:MA4292 cell surface protein.
   
   0.752
Tery_5023
Multicopper oxidase, type 2; PFAM: Hemolysin-type calcium-binding region multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: ana:alr0791 outer membrane secretion protein.
   
 
 0.732
Tery_0359
PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: tth:TTC1370 laccase.
   
 
 0.727
Tery_0831
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: ava:Ava_1760 multicopper oxidase, types 2 and 3.
   
 
 0.727
Tery_2564
PFAM: Penicillinase repressor; KEGG: ava:Ava_0498 transcriptional repressor, CopY family.
 
     0.683
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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