STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2607PFAM: DSBA oxidoreductase; KEGG: ava:Ava_4506 DsbA oxidoreductase. (249 aa)    
Predicted Functional Partners:
Tery_4223
PFAM: response regulator receiver; KEGG: vfi:VFA0608 two component response regulator.
    
   0.569
Tery_1504
PFAM: Thioredoxin domain; KEGG: ava:Ava_0338 thioredoxin-related.
  
 
 0.544
Tery_0301
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
      0.524
Tery_2608
PFAM: RDD domain containing protein; SMART: PDZ/DHR/GLGF; KEGG: ana:all2008 serine proteinase.
     
 0.503
Tery_0546
DNA polymerase I; KEGG: ava:Ava_0581 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease 3'-5' exonuclease; SMART: Helix-hairpin-helix motif, class 2.
     
 0.478
Tery_0628
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ava:Ava_3823 cytochrome c biogenesis protein, transmembrane region.
 
   
 0.472
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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