STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2803PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:all5042 polyamine transport system permease protein. (303 aa)    
Predicted Functional Partners:
Tery_2802
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_5055 binding-protein-dependent transport systems inner membrane component.
 
0.995
Tery_2817
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gvi:gll1402 ABC transporter permease protein.
 
0.995
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 0.990
Tery_2804
PFAM: extracellular solute-binding protein, family 1; KEGG: ava:Ava_2302 extracellular solute-binding protein, family 1.
 
 0.989
potA-2
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 0.986
Tery_2816
PFAM: extracellular solute-binding protein, family 1; KEGG: sth:STH468 spermidine/putrescine ABC transporter spermidine/putrescine-binding protein.
 
 0.983
Tery_2833
KEGG: ava:Ava_3062 periplasmic polyamine-binding protein of ABC transporter.
 
  
 0.911
Tery_2818
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bce:BC1287 spermidine/putrescine transport system permease protein potB.
  
  
 
0.910
Tery_3222
PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: syn:sll1878 ABC-type iron transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.815
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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