STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3206PFAM: WD-40 repeat; SMART: Pyrrolo-quinoline quinone; KEGG: ava:Ava_1556 WD-40 repeat. (728 aa)    
Predicted Functional Partners:
Tery_2292
PFAM: ATPase; KEGG: ana:alr7129 WD-repeat protein.
 
     0.834
Tery_0639
KEGG: gvi:glr1965 WD-repeat protein.
 
  0.789
Tery_4804
Response regulator receiver protein; KEGG: ana:alr7129 WD-repeat protein.
 
     0.784
Tery_0937
KEGG: ana:alr7129 WD-repeat protein.
 
     0.739
Tery_4055
PFAM: ATPase; KEGG: ana:alr7129 WD-repeat protein.
 
     0.737
Tery_0590
KEGG: gvi:glr1965 WD-repeat protein.
 
     0.680
Tery_1440
KEGG: ana:alr7129 WD-repeat protein.
 
     0.654
Tery_2114
KEGG: ana:alr7129 WD-repeat protein.
 
     0.614
Tery_1102
PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ana:all2787 probable kinesin light chain.
  
 
  0.610
Tery_4362
PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ana:all3838 similar to kinesin light chain.
  
 
  0.610
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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