STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3238PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1; KEGG: bce:BC0314 glycosyltransferase. (703 aa)    
Predicted Functional Partners:
Tery_3239
PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: nwi:Nwi_0538 lipopolysaccharide biosynthesis protein.
 
 0.982
Tery_3236
PFAM: Methyltransferase type 11; KEGG: bca:BCE0301 hypothetical protein.
 
  
 0.837
Tery_3237
KEGG: lmf:LMOf2365_0118 hypothetical protein.
  
  
 0.761
Tery_3753
Methyltransferase type 11; PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1 Cyclopropane-fatty-acyl-phospholipid synthase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: ava:Ava_2388 glycosyl transferase, family 2.
 
  
 0.678
Tery_0957
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ava:Ava_2639 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.660
Tery_4007
KEGG: nar:Saro_3234 polysaccharide biosynthesis protein.
 
  
 0.640
Tery_3819
PFAM: beta-ketoacyl synthase acyl transferase region short-chain dehydrogenase/reductase SDR phosphopantetheine-binding Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like Methyltransferase type 11 Methyltransferase type 12; KEGG: ana:alr2680 polyketide synthase.
  
 
 0.625
Tery_1346
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.623
Tery_3188
PFAM: transferase hexapeptide repeat Nucleotidyl transferase phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: ava:Ava_0182 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domains I and III.
  
 
 0.599
Tery_0481
TPR repeat; PFAM: glycosyl transferase, group 1 TPR repeat Sel1-like repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: RNA-processing protein, HAT helix Tetratricopeptide region; KEGG: cch:Cag_0301 TPR repeat.
  
 
 0.593
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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