STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3347KEGG: ana:all3391 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Tery_4061
PFAM: protein of unknown function UPF0136; KEGG: ava:Ava_0394 hypothetical protein.
  
     0.661
Tery_3577
UDP-galactopyranose mutase; PFAM: amine oxidase Rieske [2Fe-2S] region FAD dependent oxidoreductase; KEGG: ana:alr2785 probable phytoene dehydrogenase Rieske iron-sulfur component.
  
     0.595
Tery_1353
KEGG: ana:all1363 hypothetical protein.
  
     0.501
Tery_0280
KEGG: ava:Ava_B0181 hypothetical protein.
  
     0.463
Tery_2257
Hypothetical protein; KEGG: fnu:FN1584 beta-lactamase.
  
     0.460
Tery_0494
PFAM: FAD dependent oxidoreductase; KEGG: ana:alr0920 hypothetical protein.
  
     0.436
Tery_1475
KEGG: ava:Ava_0450 cupin region.
  
     0.426
Tery_3574
PFAM: Rieske [2Fe-2S] region; KEGG: ana:all3866 probable dioxygenase, Rieske iron-sulfur component.
  
     0.411
Tery_4114
PFAM: Mo-dependent nitrogenase-like; KEGG: ava:Ava_1587 Mo-dependent nitrogenase-like.
  
     0.406
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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