STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3399Hypothetical protein; KEGG: lic:LIC10978 syringomycin channel-forming protein. (363 aa)    
Predicted Functional Partners:
Tery_2968
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase Thioesterase condensation domain phosphopantetheine-binding; KEGG: ava:Ava_3855 amino acid adenylation.
  
 0.967
Tery_3822
PFAM: beta-ketoacyl synthase Thioesterase acyl transferase region phosphopantetheine-binding; KEGG: ava:Ava_3986 short-chain dehydrogenase/reductase SDR.
  
 0.685
Tery_3821
PFAM: beta-ketoacyl synthase acyl transferase region short-chain dehydrogenase/reductase SDR phosphopantetheine-binding; KEGG: ava:Ava_3986 short-chain dehydrogenase/reductase SDR.
   
 0.664
Tery_2109
PFAM: AMP-dependent synthetase and ligase Thioesterase phosphopantetheine-binding; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
  
 0.642
Tery_1972
PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
 
  
 0.613
Tery_1343
PFAM: Thioesterase; KEGG: ava:Ava_4730 thioesterase.
 
  
 0.603
Tery_3181
PFAM: AMP-dependent synthetase and ligase; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
 
  
 0.594
Tery_3819
PFAM: beta-ketoacyl synthase acyl transferase region short-chain dehydrogenase/reductase SDR phosphopantetheine-binding Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like Methyltransferase type 11 Methyltransferase type 12; KEGG: ana:alr2680 polyketide synthase.
   
 0.591
Tery_3398
Hypothetical protein; KEGG: lic:LIC10978 syringomycin channel-forming protein.
 
    
0.490
Tery_3400
PFAM: protein kinase pentapeptide repeat; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: ana:all2760 serine/threonine kinase.
       0.465
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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