STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3442PFAM: lipolytic enzyme, G-D-S-L; KEGG: ava:Ava_4796 lipolytic enzyme, G-D-S-L. (232 aa)    
Predicted Functional Partners:
Tery_1686
KEGG: ana:alr1356 hypothetical protein.
  
     0.672
Tery_4020
KEGG: ava:Ava_2850 hypothetical protein.
  
     0.642
Tery_1403
PFAM: TPR repeat; SMART: Tetratricopeptide region; KEGG: ava:Ava_2580 TPR repeat.
  
     0.638
Tery_3255
KEGG: ava:Ava_1696 hypothetical protein.
  
     0.623
Tery_2457
KEGG: ava:Ava_3754 hypothetical protein.
  
     0.621
Tery_1836
PFAM: peptidase M10A and M12B, matrixin and adamalysin; SMART: Peptidase, metallopeptidases; KEGG: ava:Ava_0725 peptidase, metallopeptidase.
  
     0.616
Tery_3896
KEGG: ava:Ava_3439 beta-lactamase-like.
  
     0.607
Tery_4084
KEGG: ana:alr2345 hypothetical protein.
  
     0.606
Tery_3039
KEGG: ana:all1763 hypothetical protein.
  
     0.602
Tery_2897
PFAM: protein of unknown function DUF1400; KEGG: syn:sll1507 salt-induced periplasmic protein.
  
     0.592
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.