STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3487TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: surface antigen (D15) filamentous haemagglutinin-like surface antigen variable number Polypeptide-transport-associated, ShlB-type; KEGG: ava:Ava_4426 surface antigen variable number. (1570 aa)    
Predicted Functional Partners:
Tery_3488
SMART: Tetratricopeptide region; KEGG: ana:all1176 hypothetical protein.
     0.878
Tery_0380
SMART: Tetratricopeptide region; KEGG: ana:all2170 hypothetical protein.
     0.771
Tery_3265
KEGG: ana:alr1398 hypothetical protein.
     0.768
Tery_1353
KEGG: ana:all1363 hypothetical protein.
  
  
 0.637
Tery_1012
KEGG: ava:Ava_1845 hypothetical protein.
  
     0.609
Tery_0381
PFAM: protein of unknown function DUF928; KEGG: ana:all3179 hypothetical protein.
  
     0.588
Tery_1672
KEGG: syn:slr0386 hypothetical protein.
  
   0.571
Tery_4586
PFAM: protein of unknown function DUF928; KEGG: ana:all1119 hypothetical protein.
  
     0.550
Tery_1675
KEGG: syn:slr0386 hypothetical protein.
  
   0.543
Tery_0488
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin Hemolysin-type calcium-binding region; KEGG: ava:Ava_4060 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
  
 0.542
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.