STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3562PFAM: nitroreductase; KEGG: sru:SRU_2285 nitroreductase family protein. (200 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
      0.612
Tery_4431
FHA domain containing protein; PFAM: Forkhead-associated ABC transporter related ABC-2 type transporter; SMART: ATPase; KEGG: syn:sll0778 putative MDR (multidrug resistance) family ABC transporter.
  
  
 0.564
Tery_3563
NmrA-like; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase NmrA-like; KEGG: ava:Ava_2558 3-beta hydroxysteroid dehydrogenase/isomerase.
  
    0.537
Tery_2355
TIGRFAM: uncharacterized domain; PFAM: protein of unknown function DUF181; KEGG: plt:Plut_0880 protein of unknown function DUF181.
  
  
 0.506
Tery_1079
PFAM: ABC-2 type transporter; KEGG: ava:Ava_0192 ABC-2.
  
  
 0.482
Tery_3959
Redoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: tel:tlr1198 bacterioferritin comigratory protein.
 
      0.441
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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