STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3564KEGG: ava:Ava_2559 exodeoxyribonuclease III xth; TIGRFAM: exodeoxyribonuclease III exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. (261 aa)    
Predicted Functional Partners:
nth
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
 0.966
Tery_0546
DNA polymerase I; KEGG: ava:Ava_0581 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase 5'-3' exonuclease 3'-5' exonuclease; SMART: Helix-hairpin-helix motif, class 2.
  
 0.907
Tery_0008
PFAM: DNA polymerase III, beta chain; KEGG: ava:Ava_0002 DNA polymerase III subunit beta.
   
 0.897
Tery_1172
KEGG: tel:tsr2295 hypothetical protein.
    
 
 0.855
Tery_1293
TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: ana:all3873 putative pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family.
  
    0.730
Tery_2403
TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: ava:Ava_0356 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family.
  
    0.730
Tery_2004
TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: cyb:CYB_2817 DNA-3-methyladenine glycosylase; Belongs to the DNA glycosylase MPG family.
    
 0.687
Tery_1565
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: ava:Ava_1963 DNA polymerase III subunit delta.
   
 0.681
tadA
tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
   
 
 0.639
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
    
 0.579
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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