STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3583PFAM: ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: sar:SAR0087 putative restriction enzyme. (539 aa)    
Predicted Functional Partners:
Tery_3582
McrBC 5-methylcytosine restriction system component-like; KEGG: hhe:HH1442 hypothetical protein.
 
 
 0.999
Tery_3584
KEGG: mmp:MMP0784 hypothetical protein.
 
     0.576
Tery_3585
PFAM: GCN5-related N-acetyltransferase.
       0.461
Tery_3118
Helicase-like; PFAM: SNF2-related helicase-like type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase-like; KEGG: hma:pNG6185 putative DEAD/H helicase.
 
     0.436
Tery_4237
Helicase-like; PFAM: SNF2-related helicase-like type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase-like; KEGG: hma:pNG6185 putative DEAD/H helicase.
 
     0.436
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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