STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3658PFAM: oxidoreductase FAD/NAD(P)-binding CpcD phycobilisome linker-like; KEGG: ava:Ava_0782 oxidoreductase FAD/NAD(P)-binding. (405 aa)    
Predicted Functional Partners:
Tery_1070
Assimilatory nitrate reductase (ferredoxin) precursor; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: ava:Ava_4544 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
    
 0.889
Tery_0915
TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: cyb:CYB_1598 ferredoxin, 2Fe-2S.
  
 
 
 0.764
Tery_0914
TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: gvi:gsr3623 ferredoxin.
    
 
 0.732
Tery_0916
TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: gvi:gsr3623 ferredoxin.
    
 
 0.732
Tery_3791
PFAM: photosystem I protein PsaD; KEGG: syf:Synpcc7942_1002 photosystem I reaction center subunit II.
  
  
 0.665
Tery_0754
TIGRFAM: ferredoxin [2Fe-2S]; PFAM: ferredoxin; KEGG: ava:Ava_0981 ferredoxin (2Fe-2S).
  
 
 
 0.652
psaE
Photosystem I reaction centre subunit IV/PsaE; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
  
 0.644
Tery_2210
PFAM: Phycobilisome linker polypeptide Phycobilisome protein; KEGG: ava:Ava_2620 phycobilisome protein; Belongs to the phycobilisome linker protein family.
  
  
 0.639
Tery_1634
PFAM: photosystem I reaction center protein PsaF, subunit III; KEGG: tel:tlr2411 plastocyanin docking protein.
  
  
  0.586
Tery_4504
PFAM: ferredoxin; KEGG: tel:tll1529 probable ferredoxin.
  
 
 
 0.580
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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