STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3660TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1 REG-2-like, HAD superfamily (subfamily IA) hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: ava:Ava_0809 HAD-superfamily hydrolase, subfamily IA, variant 1. (234 aa)    
Predicted Functional Partners:
Tery_3661
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ava:Ava_0810 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.596
Tery_3819
PFAM: beta-ketoacyl synthase acyl transferase region short-chain dehydrogenase/reductase SDR phosphopantetheine-binding Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like Methyltransferase type 11 Methyltransferase type 12; KEGG: ana:alr2680 polyketide synthase.
  
 
 0.545
Tery_4608
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: ava:Ava_1946 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 
    0.533
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.483
Tery_1661
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.478
Tery_3753
Methyltransferase type 11; PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1 Cyclopropane-fatty-acyl-phospholipid synthase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: ava:Ava_2388 glycosyl transferase, family 2.
  
 
 0.471
Tery_1870
KEGG: ana:all3087 hypothetical protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif phospholipase D/Transphosphatidylase; SMART: Helix-hairpin-helix DNA-binding, class 1.
  
  
 0.466
ribBA
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.405
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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