STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3661PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ava:Ava_0810 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (398 aa)    
Predicted Functional Partners:
Tery_4096
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ava:Ava_0810 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 
0.907
menA
1,4-dihydroxy-2-naphthoate phytyltransferase; Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 2-carboxy-1,4- naphthoquinone; Belongs to the MenA family. Type 2 subfamily.
  
 
  0.904
menG
Demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of 2-phytyl- 1,4-beta-naphthoquinol to phylloquinol.
     
  0.900
Tery_3660
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1 REG-2-like, HAD superfamily (subfamily IA) hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: ava:Ava_0809 HAD-superfamily hydrolase, subfamily IA, variant 1.
       0.596
Tery_3367
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: ava:Ava_3947 peptidase M52, hydrogen uptake protein.
    
 
 0.514
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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