STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3924KEGG: ava:Ava_1557 hypothetical protein. (438 aa)    
Predicted Functional Partners:
Tery_3923
PFAM: TPR repeat WD-40 repeat YD repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_2104 WD-40 repeat.
    0.857
Tery_1730
Conserved hypothetical protein; KEGG: ana:alr3496 unknown protein.
  
     0.662
Tery_0872
KEGG: syn:slr1794 putative arsenite-transporting ATPase.
  
     0.638
Tery_0929
PFAM: PBS lyase HEAT-like repeat; KEGG: ava:Ava_2039 hypothetical protein.
  
     0.638
Tery_1719
KEGG: gvi:gll4095 hypothetical protein.
  
     0.620
Tery_3771
PFAM: WD-40 repeat; KEGG: ava:Ava_1841 WD-40 repeat.
 
     0.619
Tery_0189
KEGG: ana:all3643 hypothetical protein.
  
     0.610
Tery_4219
KEGG: ava:Ava_3525 heterocyst differentiation protein.
  
     0.610
Tery_2219
Conserved hypothetical protein; KEGG: ana:all3516 unknown protein.
  
     0.609
Tery_3934
PFAM: TPR repeat WD-40 repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_2104 WD-40 repeat.
 
     0.604
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.