STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4104PFAM: Phycobilisome linker polypeptide CpcD phycobilisome linker-like; KEGG: sye:Syncc9902_1883 phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family. (289 aa)    
Predicted Functional Partners:
Tery_4105
PFAM: Phycobilisome linker polypeptide CpcD phycobilisome linker-like; KEGG: gvi:glr1265 phycoerythrin-associated linker protein; Belongs to the phycobilisome linker protein family.
 
  
 
0.947
Tery_3647
CpcD phycobilisome linker-like; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.944
Tery_0983
PFAM: Phycobilisome protein; KEGG: syd:Syncc9605_0434 C-phycoerythrin class II alpha chain.
 
 
 
 0.910
Tery_0996
PFAM: Phycobilisome protein; KEGG: sye:Syncc9902_1902 C-phycoerythrin class I alpha chain.
 
 
 
 0.910
Tery_5048
TIGRFAM: phycocyanin, alpha subunit; PFAM: Phycobilisome protein; KEGG: tel:tlr1958 phycocyanin alpha subunit.
 
 
 
 0.909
Tery_0998
PFAM: Phycobilisome protein; KEGG: gvi:gll1190 phycoerythrin beta subunit.
  
 
 
 0.891
Tery_0984
PFAM: Phycobilisome protein; KEGG: syd:Syncc9605_0435 C-phycoerythrin class II beta chain.
  
 
 
 0.890
Tery_0997
PFAM: Phycobilisome protein; KEGG: gvi:gll1190 phycoerythrin beta subunit.
  
 
 
 0.890
Tery_5049
TIGRFAM: phycocyanin, beta subunit; PFAM: Phycobilisome protein; KEGG: tel:tlr1957 phycocyanin beta subunit.
  
 
 
 0.890
Tery_3835
TIGRFAM: allophycocyanin, beta subunit; PFAM: Phycobilisome protein; KEGG: ava:Ava_0146 allophycocyanin, beta subunit.
  
 
 
 0.885
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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