STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifENKEGG: ava:Ava_4251 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase, component 1; Belongs to the NifD/NifK/NifE/NifN family. (936 aa)    
Predicted Functional Partners:
Tery_4133
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis Radical SAM; KEGG: ava:Ava_3912 nitrogenase cofactor biosynthesis protein NifB.
  
 0.978
nifH
Nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
 
 
 0.935
Tery_4129
NifZ; PFAM: NifZ; KEGG: ava:Ava_4243 NifZ.
 
   
 0.924
nifX
TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: ana:all1436 nitrogen fixation protein.
 
  
 0.921
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.907
Tery_4141
PFAM: protein of unknown function DUF269; KEGG: ava:Ava_4253 protein of unknown function DUF269.
 
    0.884
Tery_1885
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: ava:Ava_0445 4Fe-4S ferredoxin, iron-sulfur binding.
  
  
 0.769
Tery_4128
PFAM: NifT/FixU; KEGG: ava:Ava_4242 NifT/FixU.
 
  
 0.730
chlL
Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
 
 
 0.721
Tery_3773
TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: ava:Ava_0451 nitrogenase-associated protein; Belongs to the ArsC family.
  
   
 0.566
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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