STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4210AAA ATPase; KEGG: noc:Noc_1879 AAA ATPase. (55 aa)    
Predicted Functional Partners:
Tery_2448
TIGRFAM: conserved hypothetical protein; KEGG: ana:all5029 hypothetical protein.
    
 
 0.725
Tery_4211
KEGG: gvi:glr2548 hypothetical protein.
  
 
 0.536
Tery_2624
PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: ava:Ava_2381 peptidase C14, caspase catalytic subunit P20.
   
 0.501
Tery_0008
PFAM: DNA polymerase III, beta chain; KEGG: ava:Ava_0002 DNA polymerase III subunit beta.
  
 
 0.456
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.