STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4626PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ana:all1322 unknown protein. (452 aa)    
Predicted Functional Partners:
Tery_0626
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: RNA-processing protein, HAT helix Tetratricopeptide region; KEGG: mba:Mbar_A3643 TPR-domain containing protein.
 
     0.775
Tery_1251
Methyltransferase FkbM family; KEGG: pmn:PMN2A_1093 TPR repeat; TIGRFAM: methyltransferase FkbM family; PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region.
  
     0.774
Tery_3754
KEGG: ava:Ava_1043 methyltransferase FkbM; TIGRFAM: methyltransferase FkbM family; PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region.
  
     0.768
Tery_2509
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_4803 tetratricopeptide TPR_3.
  
     0.767
Tery_0023
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pmt:PMT1811 TPR repeat:HAT (Half-A-TPR) repeat.
  
     0.760
Tery_1969
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_3177 TPR repeat.
  
     0.750
Tery_2268
PFAM: glycosyl transferase, family 2 glycosyl transferase, group 1 TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2 Methyltransferase type 11; SMART: Tetratricopeptide region; KEGG: nar:Saro_0724 glycosyl transferase, family 2.
  
 
   0.722
Tery_2387
PFAM: Tetratricopeptide TPR_2; KEGG: ana:all0562 hypothetical protein.
 
   0.709
Tery_1883
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_3450 TPR repeat.
  
     0.663
Tery_4913
KEGG: ava:Ava_0153 serine/threonine protein kinase.
 
      0.594
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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