STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4711PFAM: single-stranded nucleic acid binding R3H; KEGG: ana:alr3416 putative spoIIIJ-associated protein. (166 aa)    
Predicted Functional Partners:
Tery_4710
PFAM: 60 kDa inner membrane insertion protein; KEGG: ana:alr3415 60kDa inner-membrane protein.
 
  
 0.959
Tery_2537
RNA-binding protein (contains KH domain)-like; KEGG: ana:alr1954 hypothetical protein.
   
 
 0.916
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
  
 0.810
Tery_0483
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1; KEGG: ana:alr4331 ribonuclease E.
   
   0.765
rpmH
PFAM: ribosomal protein L34; KEGG: pma:Pro1299 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.644
Tery_4697
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.631
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.600
rplB
LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
    0.591
Tery_4709
KEGG: ana:alr3414 hypothetical protein.
     
 0.535
Tery_4712
PFAM: protein of unknown function DUF177; KEGG: ana:alr3417 hypothetical protein.
       0.535
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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