STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4723PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mba:Mbar_A2604 TPR repeat. (289 aa)    
Predicted Functional Partners:
Tery_2387
PFAM: Tetratricopeptide TPR_2; KEGG: ana:all0562 hypothetical protein.
 
   0.898
Tery_2560
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_B0147 TPR repeat.
 
     0.784
Tery_3965
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_4974 TPR repeat.
 
   0.781
Tery_5036
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_2856 TPR repeat.
  
     0.774
Tery_3148
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: SH3-like region Tetratricopeptide region; KEGG: mth:MTH72 O-linked GlcNAc transferase.
  
     0.773
Tery_1969
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_3177 TPR repeat.
  
     0.756
Tery_1883
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_3450 TPR repeat.
  
     0.725
Tery_2811
PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Sel1-like Tetratricopeptide region; KEGG: cch:Cag_1504 TPR repeat.
 
     0.504
Tery_3569
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_3507 protein prenyltransferase, alpha subunit.
 
    
0.455
Tery_0529
PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: gga:416913 similar to TPR repeat containing protein KIAA1043.
  
     0.446
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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