STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4727PFAM: peptidase U62, modulator of DNA gyrase; KEGG: ana:alr4890 putative PmbA protein. (431 aa)    
Predicted Functional Partners:
Tery_4728
PFAM: protein of unknown function DUF1092; KEGG: ava:Ava_2159 protein of unknown function DUF1092.
 
     0.642
Tery_3953
KEGG: ava:Ava_0202 hypothetical protein.
  
     0.547
Tery_1122
PFAM: Abortive infection protein; KEGG: ana:all4324 hypothetical protein.
  
     0.530
Tery_2682
KEGG: ava:Ava_2986 hypothetical protein.
  
     0.465
Tery_0575
KEGG: gvi:gll1515 hypothetical protein.
  
     0.442
Tery_0260
KEGG: ava:Ava_4400 hypothetical protein.
  
     0.426
Tery_4881
PFAM: Heavy metal transport/detoxification protein; KEGG: syn:ssr2857 copper metallochaperone.
  
     0.416
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.