Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TWT_592 | TWT_636 | TWT_592 | TWT_636 | Ribosomal protein acetyltransferase. | Putative methyltransferase. | 0.463 |
TWT_592 | cmk | TWT_592 | TWT_051 | Ribosomal protein acetyltransferase. | Cytidylate kinase/GTP-binding protein fusion; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.438 |
TWT_636 | TWT_592 | TWT_636 | TWT_592 | Putative methyltransferase. | Ribosomal protein acetyltransferase. | 0.463 |
TWT_636 | TWT_806 | TWT_636 | TWT_806 | Putative methyltransferase. | Unknown; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.578 |
TWT_636 | cmk | TWT_636 | TWT_051 | Putative methyltransferase. | Cytidylate kinase/GTP-binding protein fusion; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.400 |
TWT_636 | coaD | TWT_636 | TWT_565 | Putative methyltransferase. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.837 |
TWT_636 | glyA | TWT_636 | TWT_635 | Putative methyltransferase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.570 |
TWT_806 | TWT_636 | TWT_806 | TWT_636 | Unknown; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Putative methyltransferase. | 0.578 |
cmk | TWT_592 | TWT_051 | TWT_592 | Cytidylate kinase/GTP-binding protein fusion; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | Ribosomal protein acetyltransferase. | 0.438 |
cmk | TWT_636 | TWT_051 | TWT_636 | Cytidylate kinase/GTP-binding protein fusion; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | Putative methyltransferase. | 0.400 |
cmk | coaD | TWT_051 | TWT_565 | Cytidylate kinase/GTP-binding protein fusion; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.535 |
coaD | TWT_636 | TWT_565 | TWT_636 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Putative methyltransferase. | 0.837 |
coaD | cmk | TWT_565 | TWT_051 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Cytidylate kinase/GTP-binding protein fusion; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily. | 0.535 |
glyA | TWT_636 | TWT_635 | TWT_636 | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | Putative methyltransferase. | 0.570 |