STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_0469Identified by match to protein family HMM PF01835; match to protein family HMM PF07703. (1837 aa)    
Predicted Functional Partners:
pbpC
Penicillin-binding protein 1C; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073.
 
   
 0.963
BFO_2162
Inner membrane protein CreD; Identified by match to protein family HMM PF06123.
  
     0.614
BFO_1162
Putative membrane protein; Identified by match to protein family HMM PF01944; overlaps another CDS with the same product name.
  
    0.608
BFO_1165
Hypothetical protein.
  
     0.586
BFO_1167
Identified by match to protein family HMM PF01882.
  
    0.521
BFO_1135
RDD family protein; Identified by match to protein family HMM PF06271.
  
    0.509
BFO_1164
Hypothetical protein.
  
     0.508
BFO_0769
Hypothetical protein.
 
  
 0.499
BFO_0470
Hypothetical protein; Identified by glimmer; putative.
       0.467
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.467
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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