STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_0653Identified by match to protein family HMM PF04237. (117 aa)    
Predicted Functional Partners:
BFO_0654
biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
       0.817
BFO_0652
Identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; Belongs to the UPF0102 family.
       0.773
BFO_0651
ABC 3 transport family protein; Identified by match to protein family HMM PF00950.
       0.514
BFO_0655
Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
       0.497
BFO_0649
PspC domain protein; Identified by match to protein family HMM PF04024.
 
     0.451
BFO_0650
Transcriptional regulator, PadR family; Identified by match to protein family HMM PF03551.
 
     0.446
BFO_1016
Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.
  
  
 0.444
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.