STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_0879Hypothetical protein; Overlaps another CDS with the same product name. (323 aa)    
Predicted Functional Partners:
BFO_0878
Hypothetical protein; Overlaps another CDS with the same product name.
       0.817
BFO_0877
Sigma-70 region 2; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.810
BFO_0605
Hypothetical protein.
  
     0.504
BFO_3310
Hypothetical protein.
  
     0.485
BFO_0017
Hypothetical protein.
  
     0.480
BFO_0876
Hypothetical protein.
       0.479
BFO_0666
Hypothetical protein.
 
    0.440
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.