STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_1007Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326; match to protein family HMM PF00930. (725 aa)    
Predicted Functional Partners:
BFO_1008
THUMP domain protein; Identified by match to protein family HMM PF01170; match to protein family HMM PF02926; Belongs to the methyltransferase superfamily.
  
    0.747
BFO_0377
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
   
 0.713
BFO_1009
Putative lipoprotein.
       0.678
BFO_1010
Hypothetical protein.
       0.483
BFO_3171
Peptidase, M28 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389.
  
    0.475
BFO_2851
Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326; match to protein family HMM PF02897.
  
  
 0.441
BFO_3301
Acyltransferase; Identified by match to protein family HMM PF01553.
 
     0.426
BFO_3297
WD40-like protein; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.423
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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