STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_1620Identified by match to protein family HMM PF00903. (131 aa)    
Predicted Functional Partners:
BFO_1619
Hypothetical protein.
       0.773
BFO_1618
Methyltransferase domain protein; Identified by match to protein family HMM PF08241.
       0.623
BFO_0330
Putative membrane protein.
  
     0.601
BFO_3096
Hypothetical protein.
  
     0.516
BFO_0388
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.515
BFO_0589
Identified by match to protein family HMM PF07980.
  
     0.465
BFO_0389
Putative membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.454
BFO_0546
Hypothetical protein.
  
     0.448
BFO_1611
Hypothetical protein.
 
     0.447
BFO_0073
Hypothetical protein.
  
     0.443
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.