STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BFO_1981Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103. (769 aa)    
Predicted Functional Partners:
BFO_1980
Hypothetical protein.
 
   
 0.956
BFO_0321
Putative lipoprotein.
  
 
   0.665
BFO_1447
Outer membrane protein; Identified by match to protein family HMM PF03938.
 
  
 0.629
BFO_0843
Hypothetical protein.
 
   
 0.620
yfiO
Outer membrane assembly lipoprotein YfiO; Identified by match to protein family HMM TIGR03302.
 
 
 0.607
BFO_2027
Putative RIP metalloprotease RseP; Identified by match to protein family HMM PF02163.
 
  
 0.590
BFO_3039
Transporter, Ompp1/FadL/TodX family; Identified by match to protein family HMM PF03349.
  
 
 
 0.582
BFO_2979
FHA domain protein; Identified by match to protein family HMM PF00498.
  
     0.563
BFO_1442
Putative lipoprotein.
 
 
 0.561
BFO_1086
Identified by match to protein family HMM PF01841.
  
    0.559
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.