Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BFO_2201Hypothetical protein; Identified by glimmer; putative. (39 aa)    
Predicted Functional Partners:
BFO_2202
Dihydrodipicolinate synthetase family; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
       0.523
BFO_2203
N-acylglucosamine 2-epimerase; Identified by match to protein family HMM PF07221.
       0.523
BFO_2204
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
       0.474
BFO_2205
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR04056; match to protein family HMM TIGR04057.
       0.416
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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