STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_2285Putative unsaturated glucuronyl hydrolase; Identified by match to protein family HMM PF07470. (405 aa)    
Predicted Functional Partners:
BFO_2289
Putative lipoprotein.
 
     0.845
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.807
gno
Gluconate 5-dehydrogenase; Identified by match to protein family HMM PF00106.
 
   
 0.709
BFO_2291
Heparinase II/III-like protein; Identified by match to protein family HMM PF07940.
 
  
 0.650
BFO_2286
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR04056; match to protein family HMM TIGR04057.
       0.596
BFO_2287
Identified by match to protein family HMM PF07980.
       0.580
BFO_2290
Arylsulfatase; Identified by match to protein family HMM PF00884.
 
    0.508
BFO_3043
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494.
  
   
 0.414
BFO_2292
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
 
  
 0.411
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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