STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_2733Hypothetical protein. (193 aa)    
Predicted Functional Partners:
BFO_1599
Putative lipoprotein.
  
     0.676
BFO_1890
Hypothetical protein.
  
     0.669
BFO_0273
Repeat protein; Identified by match to protein family HMM PF09479; match to protein family HMM TIGR02543.
  
     0.664
BFO_2814
Hypothetical protein.
  
     0.588
BFO_0561
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495; match to protein family HMM PF07730.
  
     0.582
BFO_1609
Hypothetical protein.
  
     0.567
BFO_2734
Hypothetical protein; Identified by glimmer; putative.
       0.522
BFO_1598
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.492
BFO_1398
Identified by match to protein family HMM PF07980.
  
     0.484
BFO_1619
Hypothetical protein.
  
     0.460
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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