STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_3073Septum formation initiator; Identified by match to protein family HMM PF04977. (100 aa)    
Predicted Functional Partners:
BFO_0399
Hypothetical protein.
 
 
 
 0.922
BFO_3072
Hypothetical protein.
       0.817
BFO_1847
Hypothetical protein.
 
 
 
 0.670
BFO_1673
Identified by match to protein family HMM PF02674.
  
    0.656
BFO_0406
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
 
 
 0.648
BFO_0952
Hypothetical protein.
 
 
 
 0.620
BFO_1763
Hypothetical protein.
  
     0.615
porT
PorT protein.
  
     0.581
BFO_1668
Hypothetical protein.
  
     0.578
BFO_3034
Putative lipoprotein.
  
 
 0.556
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.